Hmmm,
That's a question that's probably best answered by trial and error.
Your boat is not a sound room with a defined listening position. When you start running multiple subs you will probably hear different things in different locations. Remember you are hearing/feeling pressure waves, if the waves arrive in phase then they add if they arrive out of phase then they can begin to cancel each other, they all travel at the speed of sound but the wavelengths vary by frequency. I would recommend a single sub or multiple subs very close to each other. My guess is that two 12s will need to be placed in different locations? More is not always better. If you are running 2 speakers off a single amp they will split the power regardless of how they are wired (parallel=splitting current, series=splitting voltage, watts=current X voltage). Since your weakest link is probably the amp it might make sense to let it work it's best on one sub, provided you can optimize the impedence match between the sub and the amp. My guess is that your Sony will drive a 4 ohm load in mono, not 2 ohm.
Just for kicks put a top view diagram of you planned system so we can see what is going where. I will try to attach a sample, not sure if doc files show up correctly.